PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 354aa    MW: 39065.5 Da    PI: 7.6939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.52.9e-15272297126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tGtC+yGd C+FaHg
  XP_004497021.1 272 FKTELCNKWQETGTCPYGDHCQFAHG 297
                     79***********************8 PP

2zf-CCCH18.34e-06310334125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  XP_004497021.1 310 YKTEVCRMVLA-GvVCPYGHRCHFRH 334
                     9**********.66**********88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.6E-19267304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-11268303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004271299IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9271298IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-12272297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-8305339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-12305338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859309337IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4309336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MHNKDVCSPS SKGGFGVNTA GHMQSNAGAL ASLYSALTNE NHPSLSGNCS NGGGVSLYQY  60
SDSGTEYDSC VIQKHQDMVN RHSMCLSRLV ETSKEVEALQ QENGQLRALN KELQKQLNLL  120
IQASLENRYG SGGGSSGQTQ TTPFDVLHGF HSLNLGDGKE NCADWNNNNI NNNNKDLQEV  180
SDESPTSVIE NNGVEVERFS LPKSISVRSN GYLKMAQPPT VATNNSNACR TKGATRSRAS  240
STQPDAVQKV YVRGGQKEEE PLEMVVYNQG MFKTELCNKW QETGTCPYGD HCQFAHGIGE  300
LRPVIRHPRY KTEVCRMVLA GVVCPYGHRC HFRHALNEQE RLSQPKPRSM KLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22272338470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-104AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497021.10.0PREDICTED: zinc finger CCCH domain-containing protein 15 isoform X2
SwissprotQ9C9F55e-87C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A072VQ630.0A0A072VQ63_MEDTR; Uncharacterized protein
STRINGGLYMA10G41531.11e-175(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-81C3H family protein